#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02678/HG02678.cram --algo AlignmentStat 1000G/HG02678/QCmetrics/HG02678.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380056334	380056334	1.000000	0	379946203	0.999710	56398400302	354928356	52899151123	52068840180	0.000000	0.004269	0.003547	0.000257	150.000000	379142001	0.997883	0	0.500562	0.008070	0.000000	
SECOND_OF_PAIR	380056334	380056334	1.000000	0	379200782	0.997749	56097847746	352154940	52469249232	51612535092	0.000000	0.004415	0.003608	0.000263	150.000000	379142001	0.999845	0	0.500737	0.008337	0.000000	
PAIR	760112668	760112668	1.000000	0	759146985	0.998730	112496248048	707083296	105368400355	103681375272	0.000000	0.004342	0.003577	0.000260	150.000000	758284002	0.998863	0	0.500649	0.008203	0.000000