#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02679/HG02679.cram --algo AlignmentStat 1000G/HG02679/QCmetrics/HG02679.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387859190	387859190	1.000000	0	387739213	0.999691	57563040204	365698755	54500016995	53580746632	0.000000	0.004216	0.003623	0.000254	150.000000	386977656	0.998036	0	0.500524	0.006927	0.000001	
SECOND_OF_PAIR	387859190	387859190	1.000000	0	387042924	0.997895	57309944657	363349327	54140694801	53182996010	0.000000	0.004368	0.003707	0.000259	150.000000	386977656	0.999831	0	0.500663	0.007097	0.000000	
PAIR	775718380	775718380	1.000000	0	774782137	0.998793	114872984861	729048082	108640711796	106763742642	0.000000	0.004292	0.003665	0.000257	150.000000	773955312	0.998933	0	0.500594	0.007012	0.000000