#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02682/HG02682.cram --algo AlignmentStat 1000G/HG02682/QCmetrics/HG02682.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	352577119	352577119	1.000000	0	352487065	0.999745	52328708162	332189014	49513573023	48627262592	0.000000	0.004095	0.003504	0.000224	150.000000	351718131	0.997819	0	0.500585	0.006488	0.000000	
SECOND_OF_PAIR	352577119	352577119	1.000000	0	351775054	0.997725	52053864746	329448620	49102987947	48270422039	0.000000	0.004054	0.003375	0.000231	150.000000	351718131	0.999838	0	0.500915	0.006681	0.000000	
PAIR	705154238	705154238	1.000000	0	704262119	0.998735	104382572908	661637634	98616560970	96897684631	0.000000	0.004075	0.003439	0.000228	150.000000	703436262	0.998827	0	0.500750	0.006584	0.000000