#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02721/HG02721.cram --algo AlignmentStat 1000G/HG02721/QCmetrics/HG02721.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368666695	368666695	1.000000	0	368565469	0.999725	54689703150	345131822	51434767718	50560971302	0.000000	0.004371	0.003669	0.000260	150.000000	367668725	0.997567	0	0.500542	0.006903	0.000000	
SECOND_OF_PAIR	368666695	368666695	1.000000	0	367728827	0.997456	54375132776	342132729	50975893819	50067838885	0.000000	0.004548	0.003754	0.000267	150.000000	367668725	0.999837	0	0.501060	0.007056	0.000000	
PAIR	737333390	737333390	1.000000	0	736294296	0.998591	109064835926	687264551	102410661537	100628810187	0.000000	0.004459	0.003711	0.000263	150.000000	735337450	0.998700	0	0.500801	0.006980	0.000000