#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02728/HG02728.cram --algo AlignmentStat 1000G/HG02728/QCmetrics/HG02728.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	446052506	446052506	1.000000	0	445910887	0.999683	66275732118	420687582	62749628461	61638198676	0.000000	0.004180	0.003618	0.000232	150.000000	444600640	0.997062	0	0.500585	0.007036	0.000000	
SECOND_OF_PAIR	446052506	446052506	1.000000	0	444672018	0.996905	65763042108	416102926	62006336306	60683756705	0.000000	0.004764	0.004095	0.000240	150.000000	444600640	0.999839	0	0.501480	0.007263	0.000000	
PAIR	892105012	892105012	1.000000	0	890582905	0.998294	132038774226	836790508	124755964767	122321955381	0.000000	0.004471	0.003855	0.000236	150.000000	889201280	0.998449	0	0.501032	0.007149	0.000000