#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02733/HG02733.cram --algo AlignmentStat 1000G/HG02733/QCmetrics/HG02733.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	360840115	360840115	1.000000	0	360742515	0.999730	53610381894	338558160	50495441198	49678215486	0.000000	0.004189	0.003537	0.000231	150.000000	359909402	0.997691	0	0.500550	0.006517	0.000000	
SECOND_OF_PAIR	360840115	360840115	1.000000	0	359963697	0.997571	53273085876	335497961	50005787946	49136345325	0.000000	0.004408	0.003666	0.000237	150.000000	359909402	0.999849	0	0.500857	0.006676	0.000000	
PAIR	721680230	721680230	1.000000	0	720706212	0.998650	106883467770	674056121	100501229144	98814560811	0.000000	0.004298	0.003601	0.000234	150.000000	719818804	0.998769	0	0.500703	0.006597	0.000000