#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02775/HG02775.cram --algo AlignmentStat 1000G/HG02775/QCmetrics/HG02775.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	350735348	350735348	1.000000	0	350613525	0.999653	52081038309	330712325	49294277944	48051918652	0.000000	0.005241	0.004696	0.000223	150.000000	349710677	0.997425	0	0.500572	0.005853	0.000000	
SECOND_OF_PAIR	350735348	350735348	1.000000	0	349770623	0.997249	51781832781	328230158	48892381273	47630077667	0.000000	0.005360	0.004743	0.000228	150.000000	349710677	0.999829	0	0.500675	0.005995	0.000000	
PAIR	701470696	701470696	1.000000	0	700384148	0.998451	103862871090	658942483	98186659217	95681996319	0.000000	0.005300	0.004719	0.000226	150.000000	699421354	0.998625	0	0.500624	0.005924	0.000000