#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02783/HG02783.cram --algo AlignmentStat 1000G/HG02783/QCmetrics/HG02783.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371784389	371784389	1.000000	0	371694738	0.999759	55228685018	348406791	51980815814	51229818995	0.000000	0.003826	0.003141	0.000240	150.000000	370956783	0.998015	0	0.500521	0.007399	0.000000	
SECOND_OF_PAIR	371784389	371784389	1.000000	0	371005177	0.997904	54887788892	345758642	51520271035	50574282558	0.000000	0.004408	0.003639	0.000243	150.000000	370956783	0.999870	0	0.500710	0.007666	0.000000	
PAIR	743568778	743568778	1.000000	0	742699915	0.998831	110116473910	694165433	103501086849	101804101553	0.000000	0.004116	0.003389	0.000242	150.000000	741913566	0.998941	0	0.500615	0.007532	0.000000