#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02787/HG02787.cram --algo AlignmentStat 1000G/HG02787/QCmetrics/HG02787.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	412590468	412590468	1.000000	0	412490424	0.999758	61319441303	389228315	58055552578	57061911257	0.000000	0.004205	0.003651	0.000235	150.000000	411656447	0.997978	0	0.500600	0.006801	0.000000	
SECOND_OF_PAIR	412590468	412590468	1.000000	0	411713134	0.997874	61000479299	386551073	57613281059	56498561640	0.000000	0.004548	0.003927	0.000239	150.000000	411656447	0.999862	0	0.500558	0.007009	0.000000	
PAIR	825180936	825180936	1.000000	0	824203558	0.998816	122319920602	775779388	115668833637	113560472897	0.000000	0.004376	0.003789	0.000237	150.000000	823312894	0.998919	0	0.500579	0.006905	0.000000