#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02807/HG02807.cram --algo AlignmentStat 1000G/HG02807/QCmetrics/HG02807.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	456624015	456624015	1.000000	0	456447796	0.999614	67726427168	429003510	63921220886	62724221659	0.000000	0.004642	0.004015	0.000253	150.000000	455314137	0.997516	0	0.500639	0.007090	0.000000	
SECOND_OF_PAIR	456624015	456624015	1.000000	0	455406105	0.997333	67322239814	425702257	63380049918	61946166322	0.000000	0.005186	0.004475	0.000257	150.000000	455314137	0.999798	0	0.500649	0.007274	0.000000	
PAIR	913248030	913248030	1.000000	0	911853901	0.998473	135048666982	854705767	127301270804	124670387981	0.000000	0.004913	0.004244	0.000255	150.000000	910628274	0.998656	0	0.500644	0.007182	0.000000