#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02816/HG02816.cram --algo AlignmentStat 1000G/HG02816/QCmetrics/HG02816.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391038714	391038714	1.000000	0	390809903	0.999415	58037901210	367303760	54760858334	53761936042	0.000000	0.004555	0.003881	0.000261	150.000000	389709101	0.997183	0	0.500504	0.008163	0.000000	
SECOND_OF_PAIR	391038715	391038715	1.000000	0	389789463	0.996805	57628927417	363922246	54194136299	52945134282	0.000000	0.005273	0.004508	0.000267	150.000000	389709102	0.999794	0	0.501154	0.008511	0.000000	
PAIR	782077429	782077429	1.000000	0	780599366	0.998110	115666828627	731226006	108954994633	106707070324	0.000000	0.004913	0.004193	0.000264	150.000000	779418203	0.998487	0	0.500829	0.008337	0.000000