#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02820/HG02820.cram --algo AlignmentStat 1000G/HG02820/QCmetrics/HG02820.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	362163872	362163872	1.000000	0	362066758	0.999732	53820053652	341131405	50880068938	49988394714	0.000000	0.004364	0.003773	0.000258	150.000000	360965815	0.996959	0	0.500532	0.008364	0.000000	
SECOND_OF_PAIR	362163872	362163872	1.000000	0	361018059	0.996836	53398516263	337713398	50297156651	49085345829	0.000000	0.005334	0.004642	0.000264	150.000000	360965815	0.999855	0	0.501472	0.008729	0.000000	
PAIR	724327744	724327744	1.000000	0	723084817	0.998284	107218569915	678844803	101177225589	99073740543	0.000000	0.004847	0.004205	0.000261	150.000000	721931630	0.998405	0	0.501001	0.008546	0.000000