#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02860/HG02860.cram --algo AlignmentStat 1000G/HG02860/QCmetrics/HG02860.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387083622	387083622	1.000000	0	386984983	0.999745	57445821918	363602917	54198019601	53394015913	0.000000	0.004066	0.003393	0.000263	150.000000	386085045	0.997674	0	0.500455	0.007807	0.000000	
SECOND_OF_PAIR	387083622	387083622	1.000000	0	386154455	0.997600	57097949620	360275354	53677625383	52759095516	0.000000	0.004421	0.003646	0.000270	150.000000	386085045	0.999820	0	0.501298	0.007993	0.000000	
PAIR	774167244	774167244	1.000000	0	773139438	0.998672	114543771538	723878271	107875644984	106153111429	0.000000	0.004243	0.003519	0.000266	150.000000	772170090	0.998746	0	0.500876	0.007900	0.000000