#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02870/HG02870.cram --algo AlignmentStat 1000G/HG02870/QCmetrics/HG02870.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385995544	385995544	1.000000	0	385870741	0.999677	57366487720	363096067	54167048025	53166990207	0.000000	0.004726	0.004136	0.000265	150.000000	384869916	0.997406	0	0.500564	0.007936	0.000000	
SECOND_OF_PAIR	385995544	385995544	1.000000	0	384926911	0.997231	56874884753	359523635	53514652528	52521103602	0.000000	0.004837	0.004158	0.000273	150.000000	384869916	0.999852	0	0.500793	0.008444	0.000000	
PAIR	771991088	771991088	1.000000	0	770797652	0.998454	114241372473	722619702	107681700553	105688093809	0.000000	0.004781	0.004147	0.000269	150.000000	769739832	0.998628	0	0.500678	0.008190	0.000000