#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02882/HG02882.cram --algo AlignmentStat 1000G/HG02882/QCmetrics/HG02882.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	384053034	384053034	1.000000	0	383958930	0.999755	57067530387	361668644	53953684998	53122813965	0.000000	0.004153	0.003549	0.000263	150.000000	383022381	0.997561	0	0.500512	0.007384	0.000000	
SECOND_OF_PAIR	384053034	384053034	1.000000	0	383074213	0.997451	56674551313	358352861	53404399414	52414680846	0.000000	0.004618	0.003926	0.000269	150.000000	383022381	0.999865	0	0.500970	0.007686	0.000000	
PAIR	768106068	768106068	1.000000	0	767033143	0.998603	113742081700	720021505	107358084412	105537494811	0.000000	0.004385	0.003736	0.000266	150.000000	766044762	0.998711	0	0.500741	0.007535	0.000000