#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02884/HG02884.cram --algo AlignmentStat 1000G/HG02884/QCmetrics/HG02884.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	353901793	353901793	1.000000	0	353784386	0.999668	52519570081	332107930	49507948975	48741389451	0.000000	0.004133	0.003449	0.000264	150.000000	352989586	0.997753	0	0.500434	0.007793	0.000000	
SECOND_OF_PAIR	353901793	353901793	1.000000	0	353045613	0.997581	52217729336	329399407	49071629694	48141588619	0.000000	0.004627	0.003852	0.000270	150.000000	352989586	0.999841	0	0.501107	0.008061	0.000000	
PAIR	707803586	707803586	1.000000	0	706829999	0.998624	104737299417	661507337	98579578669	96882978070	0.000000	0.004379	0.003649	0.000267	150.000000	705979172	0.998796	0	0.500770	0.007927	0.000000