#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02887/HG02887.cram --algo AlignmentStat 1000G/HG02887/QCmetrics/HG02887.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	350600519	350600519	1.000000	0	350489319	0.999683	51951919848	328180118	48885020254	47935187828	0.000000	0.004813	0.004066	0.000261	150.000000	349591254	0.997438	0	0.500461	0.007010	0.000000	
SECOND_OF_PAIR	350600519	350600519	1.000000	0	349660890	0.997320	51637489345	325325758	48434884553	47385224753	0.000000	0.005152	0.004315	0.000266	150.000000	349591254	0.999801	0	0.501052	0.007173	0.000000	
PAIR	701201038	701201038	1.000000	0	700150209	0.998501	103589409193	653505876	97319904807	95320412581	0.000000	0.004982	0.004190	0.000264	150.000000	699182508	0.998618	0	0.500756	0.007091	0.000000