#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03012/HG03012.cram --algo AlignmentStat 1000G/HG03012/QCmetrics/HG03012.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	353538996	353538996	1.000000	0	353420444	0.999665	52421842827	331691638	49415816591	48541777856	0.000000	0.004534	0.003841	0.000230	150.000000	352504387	0.997408	0	0.500463	0.006988	0.000000	
SECOND_OF_PAIR	353538996	353538996	1.000000	0	352578236	0.997282	52108343785	328751051	48965634272	48036189169	0.000000	0.004679	0.003894	0.000237	150.000000	352504387	0.999791	0	0.501011	0.007189	0.000000	
PAIR	707077992	707077992	1.000000	0	705998680	0.998474	104530186612	660442689	98381450863	96577967025	0.000000	0.004606	0.003867	0.000233	150.000000	705008774	0.998598	0	0.500737	0.007088	0.000000