#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03019/HG03019.cram --algo AlignmentStat 1000G/HG03019/QCmetrics/HG03019.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	359525049	359525049	1.000000	0	359425408	0.999723	53385202504	339443530	50624260051	49777092595	0.000000	0.004103	0.003524	0.000222	150.000000	358462305	0.997320	0	0.500665	0.006284	0.000000	
SECOND_OF_PAIR	359525049	359525049	1.000000	0	358515130	0.997191	52978635167	336379941	50083574021	48990908007	0.000000	0.004888	0.004200	0.000227	150.000000	358462305	0.999853	0	0.501107	0.006491	0.000000	
PAIR	719050098	719050098	1.000000	0	717940538	0.998457	106363837671	675823471	100707834072	98768000602	0.000000	0.004494	0.003860	0.000225	150.000000	716924610	0.998585	0	0.500886	0.006387	0.000000