#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03027/HG03027.cram --algo AlignmentStat 1000G/HG03027/QCmetrics/HG03027.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	341178844	341178844	1.000000	0	341070006	0.999681	50634980326	319952365	47692144924	46766427610	0.000000	0.004920	0.004192	0.000266	150.000000	340268227	0.997649	0	0.500423	0.008662	0.000000	
SECOND_OF_PAIR	341178844	341178844	1.000000	0	340327112	0.997504	50331495299	317299810	47260684341	46304484366	0.000000	0.005048	0.004240	0.000272	150.000000	340268227	0.999827	0	0.500804	0.009039	0.000000	
PAIR	682357688	682357688	1.000000	0	681397118	0.998592	100966475625	637252175	94952829265	93070911976	0.000000	0.004984	0.004216	0.000269	150.000000	680536454	0.998737	0	0.500614	0.008851	0.000000