#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03054/HG03054.cram --algo AlignmentStat 1000G/HG03054/QCmetrics/HG03054.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	433700124	433700124	1.000000	0	433462213	0.999451	64332024137	406254353	60549500687	59133949850	0.000000	0.005283	0.004565	0.000263	150.000000	431825472	0.996224	0	0.500514	0.007287	0.000000	
SECOND_OF_PAIR	433700124	433700124	1.000000	0	431914402	0.995883	63717042993	402374533	59805614645	58018419074	0.000000	0.006997	0.006202	0.000267	150.000000	431825472	0.999794	0	0.500851	0.007662	0.000000	
PAIR	867400248	867400248	1.000000	0	865376615	0.997667	128049067130	808628886	120355115332	117152368924	0.000000	0.006136	0.005378	0.000265	150.000000	863650944	0.998006	0	0.500682	0.007474	0.000000