#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03055/HG03055.cram --algo AlignmentStat 1000G/HG03055/QCmetrics/HG03055.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	389037499	389037499	1.000000	0	388938146	0.999745	57725959002	364766313	54386671626	53571581804	0.000000	0.004145	0.003469	0.000281	150.000000	388095657	0.997834	0	0.500589	0.007996	0.000000	
SECOND_OF_PAIR	389037499	389037499	1.000000	0	388152836	0.997726	57396802369	361883569	53920307922	52931644586	0.000000	0.004678	0.003921	0.000286	150.000000	388095657	0.999853	0	0.500949	0.008236	0.000000	
PAIR	778074998	778074998	1.000000	0	777090982	0.998735	115122761371	726649882	108306979548	106503226390	0.000000	0.004411	0.003694	0.000284	150.000000	776191314	0.998842	0	0.500769	0.008116	0.000000