#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03057/HG03057.cram --algo AlignmentStat 1000G/HG03057/QCmetrics/HG03057.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	333211854	333211854	1.000000	0	333132891	0.999763	49450669286	312076895	46520176835	45753139740	0.000000	0.004469	0.003729	0.000271	150.000000	332293111	0.997479	0	0.500478	0.008321	0.000000	
SECOND_OF_PAIR	333211854	333211854	1.000000	0	332341855	0.997389	49134292012	309392004	46080565959	45115657909	0.000000	0.005125	0.004299	0.000277	150.000000	332293111	0.999853	0	0.501126	0.008540	0.000000	
PAIR	666423708	666423708	1.000000	0	665474746	0.998576	98584961298	621468899	92600742794	90868797649	0.000000	0.004796	0.004013	0.000274	150.000000	664586222	0.998665	0	0.500802	0.008430	0.000000