#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03066/HG03066.cram --algo AlignmentStat 1000G/HG03066/QCmetrics/HG03066.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376790288	376790288	1.000000	0	376725442	0.999828	55967010242	352979281	52666511227	52085746423	0.000000	0.003645	0.002897	0.000279	150.000000	375898238	0.997804	0	0.500490	0.007658	0.000000	
SECOND_OF_PAIR	376790288	376790288	1.000000	0	375939579	0.997742	55588255282	349808894	52131453844	51300235748	0.000000	0.004331	0.003491	0.000283	150.000000	375898238	0.999890	0	0.501131	0.007873	0.000000	
PAIR	753580576	753580576	1.000000	0	752665021	0.998785	111555265524	702788175	104797965071	103385982171	0.000000	0.003987	0.003193	0.000281	150.000000	751796476	0.998846	0	0.500810	0.007766	0.000000