#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03073/HG03073.cram --algo AlignmentStat 1000G/HG03073/QCmetrics/HG03073.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	421166391	421166391	1.000000	0	421031230	0.999679	62556715775	397221111	59225430562	58081324407	0.000000	0.004564	0.003987	0.000257	150.000000	419770949	0.997007	0	0.500610	0.007304	0.000000	
SECOND_OF_PAIR	421166391	421166391	1.000000	0	419840536	0.996852	62094401346	393339013	58580028525	57130601370	0.000000	0.005379	0.004702	0.000263	150.000000	419770949	0.999834	0	0.501261	0.007574	0.000000	
PAIR	842332782	842332782	1.000000	0	840871766	0.998266	124651117121	790560124	117805459087	115211925777	0.000000	0.004970	0.004343	0.000260	150.000000	839541898	0.998418	0	0.500935	0.007439	0.000000