#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03086/HG03086.cram --algo AlignmentStat 1000G/HG03086/QCmetrics/HG03086.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	357462630	357462630	1.000000	0	357330834	0.999631	53020373812	336597723	50137396356	48941877503	0.000000	0.005211	0.004621	0.000250	150.000000	356357850	0.997277	0	0.500640	0.006404	0.000002	
SECOND_OF_PAIR	357462630	357462630	1.000000	0	356434833	0.997125	52716853223	334192829	49733067324	48253514014	0.000000	0.006047	0.005377	0.000253	150.000000	356357850	0.999784	0	0.500915	0.006608	0.000000	
PAIR	714925260	714925260	1.000000	0	713765667	0.998378	105737227035	670790552	99870463680	97195391517	0.000000	0.005627	0.004998	0.000251	150.000000	712715700	0.998529	0	0.500777	0.006506	0.000001