#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03088/HG03088.cram --algo AlignmentStat 1000G/HG03088/QCmetrics/HG03088.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	390576127	390576127	1.000000	0	390499519	0.999804	58063157778	368046738	54924359442	54205894455	0.000000	0.003687	0.003099	0.000256	150.000000	389449602	0.997311	0	0.500518	0.006996	0.000000	
SECOND_OF_PAIR	390576127	390576127	1.000000	0	389492708	0.997226	57598166512	364688085	54319412349	53329975989	0.000000	0.004437	0.003759	0.000260	150.000000	389449602	0.999889	0	0.500994	0.007232	0.000000	
PAIR	781152254	781152254	1.000000	0	779992227	0.998515	115661324290	732734823	109243771791	107535870444	0.000000	0.004061	0.003427	0.000258	150.000000	778899204	0.998599	0	0.500756	0.007114	0.000000