#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03111/HG03111.cram --algo AlignmentStat 1000G/HG03111/QCmetrics/HG03111.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385612528	385612528	1.000000	0	385519939	0.999760	57278588514	362980446	54129872548	53257670725	0.000000	0.004102	0.003502	0.000257	150.000000	384619106	0.997663	0	0.500554	0.006990	0.000000	
SECOND_OF_PAIR	385612528	385612528	1.000000	0	384675165	0.997569	56926688326	359703779	53611917678	52628225321	0.000000	0.004465	0.003766	0.000264	150.000000	384619106	0.999854	0	0.501146	0.007219	0.000000	
PAIR	771225056	771225056	1.000000	0	770195104	0.998665	114205276840	722684225	107741790226	105885896046	0.000000	0.004283	0.003633	0.000261	150.000000	769238212	0.998758	0	0.500849	0.007105	0.000000