#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03121/HG03121.cram --algo AlignmentStat 1000G/HG03121/QCmetrics/HG03121.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	394067436	394067436	1.000000	0	393929177	0.999649	58527048873	371341746	55374100406	54590614190	0.000000	0.003956	0.003378	0.000267	150.000000	393105953	0.997910	0	0.500637	0.008540	0.000000	
SECOND_OF_PAIR	394067436	394067436	1.000000	0	393165273	0.997711	58199905386	368526238	54912216965	53927321422	0.000000	0.004484	0.003820	0.000271	150.000000	393105953	0.999849	0	0.500814	0.008770	0.000000	
PAIR	788134872	788134872	1.000000	0	787094450	0.998680	116726954259	739867984	110286317371	108517935612	0.000000	0.004219	0.003598	0.000269	150.000000	786211906	0.998879	0	0.500725	0.008655	0.000000