#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03123/HG03123.cram --algo AlignmentStat 1000G/HG03123/QCmetrics/HG03123.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377860096	377860096	1.000000	0	377752421	0.999715	56166928837	356523660	53195157675	52410734926	0.000000	0.003792	0.003237	0.000253	150.000000	376742278	0.997326	0	0.500613	0.007009	0.000000	
SECOND_OF_PAIR	377860096	377860096	1.000000	0	376787498	0.997161	55731260247	353303394	52610815937	51381975495	0.000000	0.005016	0.004356	0.000254	150.000000	376742278	0.999880	0	0.501291	0.007277	0.000000	
PAIR	755720192	755720192	1.000000	0	754539919	0.998438	111898189084	709827054	105805973612	103792710421	0.000000	0.004402	0.003793	0.000254	150.000000	753484556	0.998601	0	0.500952	0.007143	0.000000