#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03129/HG03129.cram --algo AlignmentStat 1000G/HG03129/QCmetrics/HG03129.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363438490	363438490	1.000000	0	363353844	0.999767	54016213073	342492480	51116363084	50452043836	0.000000	0.003804	0.003210	0.000261	150.000000	362072969	0.996475	0	0.500732	0.006718	0.000000	
SECOND_OF_PAIR	363438490	363438490	1.000000	0	362109964	0.996345	53400788296	339226312	50396454022	49311967961	0.000000	0.005184	0.004502	0.000263	150.000000	362072969	0.999898	0	0.500839	0.007206	0.000000	
PAIR	726876980	726876980	1.000000	0	725463808	0.998056	107417001369	681718792	101512817106	99764011797	0.000000	0.004490	0.003851	0.000262	150.000000	724145938	0.998183	0	0.500785	0.006961	0.000000