#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03132/HG03132.cram --algo AlignmentStat 1000G/HG03132/QCmetrics/HG03132.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375923252	375923252	1.000000	0	375834807	0.999765	55807697756	354511597	52840804377	51966414629	0.000000	0.004142	0.003563	0.000255	150.000000	374898105	0.997508	0	0.500516	0.007718	0.000000	
SECOND_OF_PAIR	375923252	375923252	1.000000	0	374953691	0.997421	55471930660	351400508	52354596631	51394349439	0.000000	0.004477	0.003806	0.000261	150.000000	374898105	0.999852	0	0.501176	0.007962	0.000000	
PAIR	751846504	751846504	1.000000	0	750788498	0.998593	111279628416	705912105	105195401008	103360764068	0.000000	0.004309	0.003684	0.000258	150.000000	749796210	0.998678	0	0.500845	0.007840	0.000000