#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03193/HG03193.cram --algo AlignmentStat 1000G/HG03193/QCmetrics/HG03193.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376564895	376564895	1.000000	0	376479375	0.999773	55899556475	352104568	52497047134	51710034162	0.000000	0.004275	0.003538	0.000270	150.000000	375695436	0.997918	0	0.500538	0.008312	0.000000	
SECOND_OF_PAIR	376564895	376564895	1.000000	0	375747287	0.997829	55601780243	349533113	52077566456	51099220526	0.000000	0.004838	0.004021	0.000274	150.000000	375695436	0.999862	0	0.500802	0.008565	0.000000	
PAIR	753129790	753129790	1.000000	0	752226662	0.998801	111501336718	701637681	104574613590	102809254688	0.000000	0.004556	0.003779	0.000272	150.000000	751390872	0.998889	0	0.500670	0.008439	0.000000