#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03199/HG03199.cram --algo AlignmentStat 1000G/HG03199/QCmetrics/HG03199.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369091177	369091177	1.000000	0	368999549	0.999752	54735929533	345288888	51453765792	50596522714	0.000000	0.004374	0.003605	0.000274	150.000000	368092593	0.997542	0	0.500427	0.007771	0.000000	
SECOND_OF_PAIR	369091177	369091177	1.000000	0	368156434	0.997467	54427546005	342202471	50996123012	50158209663	0.000000	0.004531	0.003681	0.000282	150.000000	368092593	0.999827	0	0.501070	0.008056	0.000000	
PAIR	738182354	738182354	1.000000	0	737155983	0.998610	109163475538	687491359	102449888804	100754732377	0.000000	0.004452	0.003643	0.000278	150.000000	736185186	0.998683	0	0.500748	0.007913	0.000000