#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03209/HG03209.cram --algo AlignmentStat 1000G/HG03209/QCmetrics/HG03209.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369862024	369862024	1.000000	0	369744176	0.999681	54823051555	346764271	51642956510	50695127469	0.000000	0.004749	0.004038	0.000256	150.000000	368960307	0.997880	0	0.500594	0.007367	0.000000	
SECOND_OF_PAIR	369862024	369862024	1.000000	0	369039446	0.997776	54566409386	344312899	51273383781	50291916296	0.000000	0.004817	0.004022	0.000261	150.000000	368960307	0.999786	0	0.500621	0.007606	0.000000	
PAIR	739724048	739724048	1.000000	0	738783622	0.998729	109389460941	691077170	102916340291	100987043765	0.000000	0.004783	0.004030	0.000259	150.000000	737920614	0.998832	0	0.500607	0.007486	0.000000