#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03270/HG03270.cram --algo AlignmentStat 1000G/HG03270/QCmetrics/HG03270.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	631891323	631891323	1.000000	0	631670873	0.999651	93766931625	595532359	88744076414	87052461743	0.000000	0.004567	0.004002	0.000251	150.000000	630016913	0.997382	0	0.500572	0.007084	0.000000	
SECOND_OF_PAIR	631891323	631891323	1.000000	0	630139793	0.997228	93165582329	590298263	87911481061	86031051877	0.000000	0.004907	0.004251	0.000257	150.000000	630016913	0.999805	0	0.500837	0.007341	0.000000	
PAIR	1263782646	1263782646	1.000000	0	1261810666	0.998440	186932513954	1185830622	176655557475	173083513620	0.000000	0.004736	0.004126	0.000254	150.000000	1260033826	0.998592	0	0.500704	0.007212	0.000000