#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03295/HG03295.cram --algo AlignmentStat 1000G/HG03295/QCmetrics/HG03295.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363667385	363667385	1.000000	0	363593668	0.999797	54041015488	341496866	50958087798	50232786866	0.000000	0.003882	0.003204	0.000260	150.000000	362660463	0.997433	0	0.500563	0.006803	0.000000	
SECOND_OF_PAIR	363667385	363667385	1.000000	0	362700757	0.997342	53611316833	338452466	50406081498	49457126113	0.000000	0.004547	0.003777	0.000263	150.000000	362660463	0.999889	0	0.500827	0.007018	0.000000	
PAIR	727334770	727334770	1.000000	0	726294425	0.998570	107652332321	679949332	101364169296	99689912979	0.000000	0.004213	0.003489	0.000262	150.000000	725320926	0.998660	0	0.500695	0.006911	0.000000