#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03311/HG03311.cram --algo AlignmentStat 1000G/HG03311/QCmetrics/HG03311.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387294786	387294786	1.000000	0	387201878	0.999760	57517505188	362367061	54027357565	53162771107	0.000000	0.004151	0.003479	0.000261	150.000000	386348281	0.997795	0	0.500512	0.008048	0.000000	
SECOND_OF_PAIR	387294786	387294786	1.000000	0	386408024	0.997710	57202695650	359304211	53564905185	52678010492	0.000000	0.004280	0.003524	0.000268	150.000000	386348281	0.999845	0	0.500840	0.008303	0.000000	
PAIR	774589572	774589572	1.000000	0	773609902	0.998735	114720200838	721671272	107592262750	105840781599	0.000000	0.004215	0.003502	0.000265	150.000000	772696562	0.998819	0	0.500676	0.008175	0.000000