#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03410/HG03410.cram --algo AlignmentStat 1000G/HG03410/QCmetrics/HG03410.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	345893906	345893906	1.000000	0	345724011	0.999509	51287379928	325828985	48536900740	47652204728	0.000000	0.004597	0.004010	0.000250	150.000000	344811052	0.997359	0	0.500522	0.007132	0.000000	
SECOND_OF_PAIR	345893906	345893906	1.000000	0	344890178	0.997098	50977127353	323036541	48097069311	47102234427	0.000000	0.004909	0.004230	0.000256	150.000000	344811052	0.999771	0	0.501061	0.007378	0.000000	
PAIR	691787812	691787812	1.000000	0	690614189	0.998303	102264507281	648865526	96633970051	94754439155	0.000000	0.004752	0.004119	0.000253	150.000000	689622104	0.998563	0	0.500791	0.007255	0.000000