#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03428/HG03428.cram --algo AlignmentStat 1000G/HG03428/QCmetrics/HG03428.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375242067	375242067	1.000000	0	375155224	0.999769	55773248651	352698193	52625037198	51865729499	0.000000	0.003914	0.003319	0.000261	150.000000	374201971	0.997459	0	0.500570	0.006861	0.000000	
SECOND_OF_PAIR	375242067	375242067	1.000000	0	374251099	0.997359	55357528586	349352183	52049666567	51010477449	0.000000	0.004758	0.004063	0.000267	150.000000	374201971	0.999869	0	0.501239	0.007123	0.000000	
PAIR	750484134	750484134	1.000000	0	749406323	0.998564	111130777237	702050376	104674703765	102876206948	0.000000	0.004334	0.003689	0.000264	150.000000	748403942	0.998662	0	0.500904	0.006992	0.000000