#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03437/HG03437.cram --algo AlignmentStat 1000G/HG03437/QCmetrics/HG03437.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378354983	378354983	1.000000	0	378252161	0.999728	56181337077	355387794	53017237750	52281731553	0.000000	0.003866	0.003221	0.000266	150.000000	377064717	0.996861	0	0.500623	0.007343	0.000000	
SECOND_OF_PAIR	378354983	378354983	1.000000	0	377116799	0.996727	55661701890	351389784	52321019912	51326969265	0.000000	0.004648	0.003890	0.000271	150.000000	377064717	0.999862	0	0.501365	0.007565	0.000000	
PAIR	756709966	756709966	1.000000	0	755368960	0.998228	111843038967	706777578	105338257662	103608700818	0.000000	0.004255	0.003553	0.000269	150.000000	754129434	0.998359	0	0.500993	0.007454	0.000000