#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03458/HG03458.cram --algo AlignmentStat 1000G/HG03458/QCmetrics/HG03458.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	346584273	346584273	1.000000	0	346494500	0.999741	51504660076	325764858	48617015356	48053309046	0.000000	0.003635	0.003004	0.000269	150.000000	345488371	0.997096	0	0.500588	0.007024	0.000000	
SECOND_OF_PAIR	346584273	346584273	1.000000	0	345528198	0.996953	51005494559	322687722	47996423569	47137019599	0.000000	0.005735	0.005017	0.000272	150.000000	345488371	0.999885	0	0.500898	0.007497	0.000000	
PAIR	693168546	693168546	1.000000	0	692022698	0.998347	102510154635	648452580	96613438925	95190328645	0.000000	0.004680	0.004004	0.000270	150.000000	690976742	0.998489	0	0.500743	0.007260	0.000000