#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03469/HG03469.cram --algo AlignmentStat 1000G/HG03469/QCmetrics/HG03469.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	362040493	362040493	1.000000	0	361864628	0.999514	53679917161	338667635	50439702160	49069085613	0.000000	0.005852	0.005142	0.000255	150.000000	360678558	0.996722	0	0.500614	0.007523	0.000000	
SECOND_OF_PAIR	362040493	362040493	1.000000	0	360761238	0.996467	53285700975	335575347	49927110649	48326828720	0.000000	0.006582	0.005791	0.000261	150.000000	360678558	0.999771	0	0.500809	0.007741	0.000000	
PAIR	724080986	724080986	1.000000	0	722625866	0.997990	106965618136	674242982	100366812809	97395914333	0.000000	0.006215	0.005464	0.000258	150.000000	721357116	0.998244	0	0.500712	0.007632	0.000000