#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03488/HG03488.cram --algo AlignmentStat 1000G/HG03488/QCmetrics/HG03488.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378553443	378553443	1.000000	0	378468626	0.999776	56281233236	356773194	53235256085	52457198671	0.000000	0.003695	0.003137	0.000224	150.000000	377615581	0.997746	0	0.500512	0.006664	0.000000	
SECOND_OF_PAIR	378553443	378553443	1.000000	0	377663878	0.997650	55922000092	353467748	52705552064	51877356866	0.000000	0.003961	0.003302	0.000231	150.000000	377615581	0.999872	0	0.501082	0.006867	0.000000	
PAIR	757106886	757106886	1.000000	0	756132504	0.998713	112203233328	710240942	105940808149	104334555537	0.000000	0.003828	0.003219	0.000227	150.000000	755231162	0.998808	0	0.500797	0.006765	0.000000