#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03490/HG03490.cram --algo AlignmentStat 1000G/HG03490/QCmetrics/HG03490.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375177286	375177286	1.000000	0	375068767	0.999711	55779316832	352232363	52568251655	51942352924	0.000000	0.003474	0.002850	0.000233	150.000000	373976643	0.997088	0	0.500668	0.007601	0.000000	
SECOND_OF_PAIR	375177286	375177286	1.000000	0	374021551	0.996919	55234324951	349015074	51906391858	50982431473	0.000000	0.005592	0.004883	0.000236	150.000000	373976643	0.999880	0	0.500547	0.008182	0.000000	
PAIR	750354572	750354572	1.000000	0	749090318	0.998315	111013641783	701247437	104474643513	102924784397	0.000000	0.004528	0.003860	0.000234	150.000000	747953286	0.998482	0	0.500607	0.007891	0.000000