#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03515/HG03515.cram --algo AlignmentStat 1000G/HG03515/QCmetrics/HG03515.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367263546	367263546	1.000000	0	367174023	0.999756	54533444797	343461883	51240530019	50539860365	0.000000	0.003936	0.003189	0.000266	150.000000	366112428	0.997109	0	0.500583	0.007420	0.000000	
SECOND_OF_PAIR	367263546	367263546	1.000000	0	366159557	0.996994	54045308783	339946009	50611229575	49664892544	0.000000	0.004703	0.003854	0.000270	150.000000	366112428	0.999871	0	0.500979	0.007698	0.000000	
PAIR	734527092	734527092	1.000000	0	733333580	0.998375	108578753580	683407892	101851759594	100204752909	0.000000	0.004318	0.003519	0.000268	150.000000	732224856	0.998488	0	0.500781	0.007559	0.000000