#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03517/HG03517.cram --algo AlignmentStat 1000G/HG03517/QCmetrics/HG03517.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	453854412	453854412	1.000000	0	453714454	0.999692	67322171229	427266422	63669628508	62447225010	0.000000	0.004630	0.004008	0.000258	150.000000	452752006	0.997879	0	0.500591	0.006717	0.000000	
SECOND_OF_PAIR	453854412	453854412	1.000000	0	452834929	0.997754	66990904831	424457103	63220814378	61901235528	0.000000	0.004873	0.004184	0.000262	150.000000	452752006	0.999817	0	0.500509	0.006887	0.000000	
PAIR	907708824	907708824	1.000000	0	906549383	0.998723	134313076060	851723525	126890442886	124348460538	0.000000	0.004751	0.004096	0.000260	150.000000	905504012	0.998847	0	0.500550	0.006802	0.000000