#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03557/HG03557.cram --algo AlignmentStat 1000G/HG03557/QCmetrics/HG03557.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	423088219	423088219	1.000000	0	422981679	0.999748	62905468451	397244836	59284925796	58432468341	0.000000	0.003872	0.003249	0.000266	150.000000	421948498	0.997557	0	0.500458	0.007158	0.000000	
SECOND_OF_PAIR	423088219	423088219	1.000000	0	422000257	0.997429	62437901760	394189676	58698260902	57645385726	0.000000	0.004407	0.003708	0.000270	150.000000	421948498	0.999877	0	0.500757	0.007471	0.000000	
PAIR	846176438	846176438	1.000000	0	844981936	0.998588	125343370211	791434512	117983186698	116077854067	0.000000	0.004139	0.003477	0.000268	150.000000	843896996	0.998716	0	0.500607	0.007314	0.000000