#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03563/HG03563.cram --algo AlignmentStat 1000G/HG03563/QCmetrics/HG03563.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371757383	371757383	1.000000	0	371507665	0.999328	55073823898	349850055	52086356535	50756945367	0.000000	0.005500	0.004883	0.000253	150.000000	370343703	0.996867	0	0.500570	0.006795	0.000000	
SECOND_OF_PAIR	371757383	371757383	1.000000	0	370448768	0.996480	54720392068	346712171	51603617568	50264922848	0.000000	0.005557	0.004855	0.000260	150.000000	370343703	0.999716	0	0.500766	0.006983	0.000000	
PAIR	743514766	743514766	1.000000	0	741956433	0.997904	109794215966	696562226	103689974103	101021868215	0.000000	0.005529	0.004869	0.000256	150.000000	740687406	0.998290	0	0.500668	0.006889	0.000000