#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03572/HG03572.cram --algo AlignmentStat 1000G/HG03572/QCmetrics/HG03572.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	352674628	352674628	1.000000	0	352609529	0.999815	52435493895	331418302	49457870998	48781462780	0.000000	0.003810	0.003215	0.000268	150.000000	351711490	0.997453	0	0.500590	0.007543	0.000000	
SECOND_OF_PAIR	352674628	352674628	1.000000	0	351751158	0.997382	52017102645	328799447	48938889295	48191969576	0.000000	0.004139	0.003474	0.000272	150.000000	351711490	0.999887	0	0.500582	0.007918	0.000000	
PAIR	705349256	705349256	1.000000	0	704360687	0.998598	104452596540	660217749	98396760293	96973432356	0.000000	0.003974	0.003344	0.000270	150.000000	703422980	0.998669	0	0.500586	0.007730	0.000000